Reference

Inferring cell-specific gene regulatory network
inferCSN-package	inferCSN: inferring Cell-Specific gene regulatory Network
inferCSN()	inferring Cell-Specific gene regulatory Network
Network processing
network_sift()	Sifting network
weight_sift()	Weight sift
Network evaluation
calculate_metrics()	Calculate Network Prediction Performance Metrics
Network visualization
plot_contrast_networks()	Plot contrast networks
plot_dynamic_networks()	Plot dynamic networks
plot_network_heatmap()	Plot network heatmap
plot_static_networks()	Plot dynamic networks
Plotting functions
plot_coefficient()	Plot coefficients
plot_coefficients()	Plot coefficients for multiple targets
plot_embedding()	Plot embedding
plot_histogram()	Plot histogram
plot_scatter()	Plot expression data in a scatter plot
Calculate gene rank
calculate_gene_rank()	Rank TFs and genes in network
Sparse regression model
single_network()	Construct network for single target gene
sparse_regression()	Sparse regression model
fit_sparse_regression()	Fit a sparse regression model
Utils functions
`%s%`	Value selection operator
as_matrix()	Convert sparse matrix into dense matrix
check_sparsity()	Check sparsity of matrix
coef(<srm>) coef(<srm_cv>)	Extracts a specific solution in the regularization path
filter_sort_matrix()	Filter and sort matrix
log_message()	Print diagnostic message
matrix_to_table()	Switch matrix to network table
meta_cells()	Detection of metacells from single-cell gene expression matrix
network_format()	Format network table
normalization()	Normalize numeric vector
parallelize_fun()	Parallelize a function
pearson_correlation()	Correlation and covariance calculation for sparse matrix
print(<srm>) print(<srm_cv>)	Prints a summary of fit_sparse_regression
predict(<srm>) predict(<srm_cv>)	Predicts response for a given sample
r_square()	\(R^2\) (coefficient of determination)
sparse_cor()	Safe correlation function which returns a sparse matrix without missing values
split_indices()	Split indices.
simulate_sparse_matrix()	Generate a simulated sparse matrix for single-cell data testing
subsampling()	Subsampling function
table_to_matrix()	Switch network table to matrix
Example data
example_matrix	Example matrix data
example_meta_data	Example meta data
example_ground_truth	Example ground truth data