Package index • inferCSN

Inferring cell-specific gene regulatory network

inferCSN-package: Inferring Cell-Specific Gene Regulatory Network
infercsn_logo(): The logo of inferCSN
inferCSN(): inferring cell-type specific gene regulatory network

Sparse regression model

single_network(): Construct network for single target gene
fit_greedy_l0(): Fit greedy L0 regression
fit_greedy_l0_batch(): Fit batched greedy L0 regressions

Utils functions

filter_sort_matrix(): Filter and sort a network matrix
network_format(): Format a network table
print(<infercsn_logo>): Print logo

Example data

example_matrix: Example matrix data
example_meta_data: Example meta data
example_ground_truth: Example ground truth data