Calculates the Set Intersection (SI) — the number of predicted
edges that exactly match true edges in the ground truth network.
Usage
calculate_si(network_table, ground_truth, tf_edges = FALSE)
Arguments
- network_table
A data frame of predicted network structure.
- ground_truth
A data frame of ground truth network.
- tf_edges
Whether to restrict the candidate edge universe to
TF-to-gene edges. Default is `FALSE`.
Value
A list with a `metrics` data frame containing SI.
