Calculate F1 Score

Calculates F1 score

Usage

calculate_f1(network_table, ground_truth)

Arguments

network_table

A data frame of predicted network structure

ground_truth

A data frame of ground truth network

Value

A list containing the metric

Examples

data(example_matrix)
data("example_ground_truth")
network_table <- inferCSN(example_matrix)
#> ℹ [2026-01-09 07:09:28] Inferring network for <dense matrix>...
#> ◌ [2026-01-09 07:09:28] Checking parameters...
#> ℹ [2026-01-09 07:09:28] Using L0 sparse regression model
#> ℹ [2026-01-09 07:09:28] Using 1 core
#> ⠙ [2026-01-09 07:09:28] Running for g3 [12/18] ■■■■■■■■■■■■■■■■■■■■■           …
#> ✔ [2026-01-09 07:09:28] Completed 18 tasks in 189ms
#> 
#> ℹ [2026-01-09 07:09:28] Building results
#> ✔ [2026-01-09 07:09:28] Inferring network done
#> ℹ [2026-01-09 07:09:28] Network information:
#> ℹ                         Edges Regulators Targets
#> ℹ                       1   306         18      18
calculate_f1(
  network_table,
  example_ground_truth
)
#> $metrics
#>   Metric Value
#> 1     F1 0.692
#>