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Network Edge Comparison Visualization

Source: R/network_evaluation.R
plot_edges_comparison.Rd

Generates visualizations comparing edges of two networks.

Usage

plot_edges_comparison(
  network_table,
  ground_truth,
  color_pattern = list(predicted = "gray", ground_truth = "#bb141a", overlap = "#1966ad",
    total = "#6C757D")
)

Arguments

network_table

A data frame of predicted network structure.

ground_truth

A data frame of ground truth network.

color_pattern

A list of colors for different categories, with default values:

  • *`predicted`* - Color for predicted edges (*`gray`*)

  • *`ground_truth`* - Color for ground truth edges (*`#bb141a`*)

  • *`overlap`* - Color for overlapping edges (*`#1966ad`*)

  • *`total`* - Color for total counts (*`#6C757D`*)

Value

A patchwork plot object containing network edge comparison and distribution plots

Examples

data("example_matrix")
data("example_ground_truth")
network_table <- inferCSN(example_matrix)
#> ℹ [2025-05-07 09:38:44] Running for <dense matrix>.
#> ℹ [2025-05-07 09:38:44] Checking input parameters.
#> ℹ [2025-05-07 09:38:44] Using L0 sparse regression model.
#> ℹ [2025-05-07 09:38:44] Using 1 core
#> ✔ [2025-05-07 09:38:44] Run done.
plot_edges_comparison(
  network_table,
  example_ground_truth
)