Plot stored SpatialDM results

Usage

SpatialDMPlot(
  object,
  result.name = NULL,
  plot_type = c("weights", "global", "local"),
  pair = NULL,
  spot = NULL,
  signaling = c("secreted", "contact"),
  highlight = NULL,
  palette = "RdBu",
  palcolor = NULL,
  theme_use = "theme_scop",
  theme_args = list(),
  ...,
  image.scale = c("lowres", "hires")
)

Arguments

object: A Seurat object with SpatialDM results.
result.name: Stored result name.
plot_type: Plot type (`"weights"`, `"global"`, or `"local"`).
pair: LR interaction name for local plotting.
spot: Spot identifier for weight plotting.
signaling: Which stored weight matrix to use.
highlight: LR interactions to label in the global plot.
palette, palcolor, theme_use, theme_args: SCOP plotting controls.
...: Additional arguments passed to SCOP spatial plotting functions.
image.scale: Image scale factor matching the selected raster.

Value

A `ggplot` or `patchwork` object.

Examples

if (FALSE) { # \dontrun{
data(visium_human_pancreas_sub)
spatial <- RunSpatialDM(
  visium_human_pancreas_sub,
  coord.cols = c("col", "row")
)
SpatialDMPlot(spatial, plot_type = "global")
SpatialDMPlot(spatial, plot_type = "weights", spot = colnames(spatial)[1])
} # }