Plot stored SpaTalk results — SpaTalkPlot • scop

Plot a stored SpaTalk communication result without rerunning the optional backend.

Usage

SpaTalkPlot(
  object,
  result.name = NULL,
  plot_type = c("network", "bubble", "pathway", "tf"),
  theme_use = "theme_scop",
  theme_args = list(),
  ...
)

Arguments

object: A `Seurat` object with SpaTalk results.
result.name: Stored SpaTalk result name.
plot_type: Network, ligand-receptor bubble, pathway bubble, or receptor-TF view.
theme_use, theme_args: Theme name or function, plus extra theme arguments. Applied to every plot type, including the delegated CCC views.
...: Arguments passed to the corresponding SCOP CCC plot.

Value

A `ggplot` or compatible plot object.