Apply SCTransform normalization

Usage

SCTransform(object, ...)

Arguments

object: Object containing count data.
...: Passed to methods.

Value

An object with SCTransform results.

Details

Calls that stick to the scop fast path defaults (vst.flavor = "v2", no conserve.memory) run through scop's optimized sparse implementation. Regression variables passed via vars.to.regress or latent.data are removed from the centered residuals with an ordinary least-squares fit on the fast path, matching Seurat's post-VST regression semantics. Truly unsupported combinations, such as conserve.memory, reference.SCT.model, residual.features, or vst.flavor = "v1", automatically delegate to the original Seurat::SCTransform implementation.