Run doublet-calling with scDblFinder

Run doublet-calling with scDblFinder

Usage

RunscDblFinder(
  srt,
  assay = "RNA",
  db_rate = ncol(srt)/1000 * 0.01,
  data_type = NULL,
  ...,
  verbose = TRUE
)

Arguments

srt

A Seurat object.

assay

Assay used for doublet calling.

db_rate

Expected doublet rate.

data_type

Optional CheckDataType result, used internally to avoid rescanning the count matrix.

...

Additional arguments to be passed to scDblFinder::scDblFinder().

verbose

Whether to print messages.