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Run doublet-calling with scDblFinder

Source: R/RunCellQC.R
RunscDblFinder.Rd

Run doublet-calling with scDblFinder

Usage

RunscDblFinder(
  object,
  assay = "RNA",
  db_rate = ncol(srt)/1000 * 0.01,
  data_type = NULL,
  ...,
  verbose = TRUE,
  srt = NULL
)

Arguments

object

A Seurat object.

assay

Assay used for doublet calling.

db_rate

Expected doublet rate.

data_type

Optional CheckDataType result, used internally to avoid rescanning the count matrix.

...

Additional arguments to be passed to scDblFinder::scDblFinder().

verbose

Whether to print messages.

srt

Deprecated alias for object; supply exactly one of the two. It will be removed in scop 1.0.0.