Rename features for the Seurat object — RenameFeatures • scop

Rename features for the Seurat object

Usage

RenameFeatures(srt, newnames = NULL, assays = NULL, verbose = TRUE)

Arguments

srt: A Seurat object.
newnames: A vector with the same length of features in Seurat object, or characters named with old features.
assays: Assays to rename.
verbose: Whether to print the message. Default is TRUE.

Examples

data(panc8_sub)
head(rownames(panc8_sub))
# Simply convert genes from human to mouse and preprocess the data
genenames <- make.unique(
  thisutils::capitalize(rownames(panc8_sub),
    force_tolower = TRUE
  )
)
names(genenames) <- rownames(panc8_sub)
panc8_rename <- RenameFeatures(
  panc8_sub,
  newnames = genenames
)
head(rownames(panc8_rename))