Cell-cycle scoring with native sparse module scoring

This follows Seurat's cell-cycle classification contract while routing the two module scores through [AddModuleScore()] when its native sparse contract is met. Unsupported scoring branches transparently use Seurat.

Usage

CellCycleScoring(
  object,
  s.features,
  g2m.features,
  ctrl = NULL,
  set.ident = FALSE,
  ...
)

Arguments

object

A Seurat object.

s.features, g2m.features

Feature vectors for S and G2M phases.

ctrl

Number of control features; defaults to the smaller feature set.

set.ident

Whether to set cell identities to the inferred phase.

...

Arguments passed to [AddModuleScore()].

Value

A Seurat object containing `S.Score`, `G2M.Score`, and `Phase`.