Add expression-program scores with a sparse native fast path

The default Seurat contract is retained. For sparse assay layers, complete feature lists, and `k = FALSE`, scop reproduces Seurat's binning and control sampling and fuses all score calculations in one sparse compiled pass. `search` and extra arguments are inert once every requested feature is present. Other branches delegate to Seurat unchanged.

Usage

AddModuleScore(
  object,
  features,
  pool = NULL,
  nbin = 24,
  ctrl = 100,
  k = FALSE,
  assay = NULL,
  name = "Cluster",
  seed = 1,
  search = FALSE,
  slot = "data",
  ...
)

Arguments

object

A Seurat object.

features

A list of feature vectors.

pool, nbin, ctrl, k, assay, name, seed, search, slot

Seurat-compatible module-score parameters.

...

Additional arguments passed to Seurat on fallback.

Value

The input Seurat object with module-score metadata columns.