Plot positional ATAC region signal
Usage
ATACRegionHeatmap(
x,
normalize = TRUE,
per.base = TRUE,
groups = NULL,
log1p = FALSE,
order.rows = FALSE,
low = "white",
high = "#2166AC"
)
ATACRegionPlot(x, normalize = TRUE, per.base = TRUE, groups = NULL)Arguments
- x
Output of
RunATACRegionMatrix().- normalize
Divide counts by the number of selected cells in each group.
- per.base
Divide counts by actual bin widths (including a shorter last bin). TRUE makes differently sized bins comparable.
- groups
Optional unique group names to plot, in display order.
- log1p
Apply log1p to displayed heatmap values only.
- order.rows
Order heatmap rows by their total displayed signal across all selected groups; the same order is used in every panel.
- low, high
Heatmap color endpoints.
Value
A ggplot with its summarized plotting data. The line plot shows the mean across supplied regions, not a confidence interval or enrichment test.