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Plot bias-corrected ATAC footprints

Usage

ATACFootprintPlot(
  object,
  motifs,
  assay = NULL,
  group.by = NULL,
  normalization = "subtract",
  show.expected = TRUE,
  ...
)

Arguments

object

A Seurat object returned by RunATACFootprint.

motifs

Unique footprint keys.

assay

Chromatin assay.

group.by

Metadata column, or NULL for identities.

normalization

Signac normalization: `subtract`, `divide`, or NULL.

show.expected

Show expected insertion profile.

...

Arguments passed to other functions.

Value

A ggplot/patchwork object from Signac.