Find the default reduction name in a Seurat object
Usage
DefaultReduction(
srt,
pattern = NULL,
min_dim = 2,
max_distance = 0.1,
verbose = TRUE
)
Arguments
- srt
A Seurat object.
- pattern
Character string containing a regular expression to search for.
- min_dim
Minimum dimension threshold.
- max_distance
Maximum distance allowed for a match.
- verbose
Whether to print the message.
Default is TRUE.
Value
Default reduction name.
Examples
data(pancreas_sub)
pancreas_sub <- standard_scop(pancreas_sub)
names(pancreas_sub@reductions)
DefaultReduction(pancreas_sub)
DefaultReduction(pancreas_sub, pattern = "pca")
DefaultReduction(pancreas_sub, pattern = "umap")