Create Meta File in HDF5 format from Seurat object

Usage

CreateMetaFile(
  object,
  meta_file,
  name = NULL,
  write_tools = FALSE,
  write_misc = FALSE,
  ignore_nlevel = 100,
  compression_level = 6,
  overwrite = TRUE,
  verbose = TRUE,
  srt = NULL
)

Arguments

object: A Seurat object.
meta_file: Path to the output meta file. If not provided, the file will be named "meta.hdf5" in the current directory.
name: Name of the dataset. If not provided, the name will default to the Seurat object's project name.
write_tools: Whether to write the tools information to the meta file.
write_misc: Whether to write the miscellaneous information to the meta file.
ignore_nlevel: The number of levels above which a metadata field will be ignored.
compression_level: The level of compression for the meta file.
overwrite: Whether to overwrite existing metadata and reductions in the meta file.
verbose: Whether to print the message. Default is TRUE.
srt: Deprecated alias for object; supply exactly one of the two. It will be removed in scop 1.0.0.

Create Meta File in HDF5 format from Seurat object

Usage

Arguments

See also