Creates a meta file in HDF5 format from a Seurat object.
Usage
CreateMetaFile(
srt,
meta_file,
name = NULL,
write_tools = FALSE,
write_misc = FALSE,
ignore_nlevel = 100,
compression_level = 6,
overwrite = TRUE
)Arguments
- srt
A Seurat object.
- meta_file
Path to the output meta file. If not provided, the file will be named
"meta.hdf5"in the current directory.- name
Name of the dataset. If not provided, the name will default to the Seurat object's project name.
- write_tools
Whether to write the tools information to the meta file. Default is
FALSE.- write_misc
Whether to write the miscellaneous information to the meta file. Default is
FALSE.- ignore_nlevel
The number of levels above which a metadata field will be ignored. Default is
100.- compression_level
The level of compression for the meta file. Default is
6.- overwrite
Whether to overwrite existing metadata and reductions in the meta file. Default is
TRUE.