Create HDF5 data file from Seurat object

Usage

CreateDataFile(
  object,
  data_file,
  name = NULL,
  assays = "RNA",
  layers = "data",
  compression_level = 6,
  overwrite = TRUE,
  verbose = TRUE,
  srt = NULL
)

Arguments

object: A Seurat object.
data_file: Path to the output data file. If not provided, the file will be named "data.hdf5" in the current directory.
name: Name of the dataset. If not provided, the name will default to the Seurat object's project name.
assays: The assays to include in the data file.
layers: The layers to include in the data file.
compression_level: Compression level for the HDF5 dataset.
overwrite: Whether to overwrite existing data in the data file.
verbose: Whether to print the message. Default is TRUE.
srt: Deprecated alias for object; supply exactly one of the two. It will be removed in scop 1.0.0.

Create HDF5 data file from Seurat object

Usage

Arguments

See also