Creates a data file in HDF5 format from a Seurat object.
Usage
CreateDataFile(
srt,
data_file,
name = NULL,
assays = "RNA",
layers = "data",
compression_level = 6,
overwrite = TRUE
)Arguments
- srt
A Seurat object.
- data_file
Path to the output data file. If not provided, the file will be named
"data.hdf5"in the current directory.- name
Name of the dataset. If not provided, the name will default to the Seurat object's project name.
- assays
The assays to include in the data file. Default is
"RNA".- layers
The layers to include in the data file. Default is
"data".- compression_level
Compression level for the HDF5 dataset. Default is
6.- overwrite
Whether to overwrite existing data in the data file. Default is
TRUE.