Propeller differential abundance wrapper — RunProportionTestPropeller • scop

Method-specific propeller-style wrapper used by RunProportionTest.

Usage

RunProportionTestPropeller(
  srt,
  group.by,
  split.by,
  sample.by,
  comparison = NULL,
  n_bootstrap = 1000,
  seed = 11,
  verbose = TRUE
)

Arguments

srt: A Seurat object.
group.by: Cell-type metadata column.
split.by: Condition metadata column.
sample.by: Sample metadata column.
comparison: Optional comparisons to perform.
n_bootstrap: Bootstrap iterations for confidence intervals.
seed: Random seed.
verbose: Whether to print messages.

See also

RunProportionTest