Method-specific Milo wrapper used by RunProportionTest.
Stores both group-level and neighborhood-level result lists. When miloR
is available, graph-ready neighborhood node/edge data are also stored under
details$milo_graph_data for visualization.
Usage
RunProportionTestMilo(
srt,
group.by,
split.by,
sample.by,
comparison = NULL,
milo_k = 20L,
milo_d = 30L,
n_bootstrap = 500,
seed = 11,
verbose = TRUE
)Arguments
- srt
A Seurat object.
- group.by
Cell-type metadata column.
- split.by
Condition metadata column.
- sample.by
Sample metadata column.
- comparison
Optional comparisons to perform.
- milo_k
k used for Milo graph building.
- milo_d
Number of dimensions used by Milo.
- n_bootstrap
Bootstrap iterations for summary/fallback.
- seed
Random seed.
- verbose
Whether to print messages.