Find features with expression patterns similar to provided features

Usage

GetSimilarFeatures(
  srt,
  features,
  n,
  features_use = rownames(srt),
  anticorr = FALSE,
  aggregator = "sum",
  assay = "RNA",
  layer = "data",
  verbose = TRUE
)

Arguments

srt: A Seurat object.
features: A character vector of feature names.
n: An integer; number of results to return.
features_use: A character vector of features eligible to be returned.
anticorr: Whether to allow negatively correlated features. Default is FALSE.
aggregator: How to combine correlations when finding similar features. Options: "sum" (default), "min" (for "and"-like filter), "max", or "mean".
assay: Which assay to use. Default is "RNA".
layer: Which layer to use. Default is data.
verbose: Whether to print the message. Default is TRUE.

Value

character vector.