Get features data — GetFeaturesData • scop

Get the data from the Assay, Assay5 or Seurat object.

Usage

GetFeaturesData(object, ...)

# S3 method for class 'Seurat'
GetFeaturesData(object, assay = NULL, ...)

# S3 method for class 'Assay'
GetFeaturesData(object, ...)

# S3 method for class 'Assay5'
GetFeaturesData(object, ...)

Arguments

object: A Assay, Assay5 or Seurat object.
...: Additional arguments passed to the method.
assay: Which assay to use. If NULL, the default assay of the Seurat object will be used. When the object also contains ChromatinAssay, the default assay and additional ChromatinAssay will be preprocessed sequentially.

Value

A data frame containing the features data.

Examples

data(pancreas_sub)
features <- GetFeaturesData(pancreas_sub)
head(features)
#>               highly_variable_genes
#> Xkr4                          False
#> Mrpl15                        False
#> Npbwr1                         <NA>
#> 4732440D04Rik                 False
#> Gm26901                       False
#> Sntg1                          True