Create a Seurat object from simulated data

Create a Seurat object from simulated data

create_seurat_object(
  sim_data,
  min_cells = 3,
  min_features = 0,
  variable_features = 2000
)

Arguments

sim_data

Output from simulate_csn_data, or a list with expression_matrix, peak_matrix, tfs, targets, cell_metadata, and peak_annotations.

min_cells

Include genes/peaks detected in at least this many cells

min_features

Include cells where at least this many genes are detected

variable_features

Number of variable features to select

Value

A Seurat object with RNA and ATAC assays

Examples

if (FALSE) { # \dontrun{
sim_data <- simulate_csn_data()
seurat_obj <- create_seurat_object(sim_data)
} # }