Simulate data for testing inferCSN

Source: R/simulate_data.R

Simulate data for testing inferCSN

simulate_csn_data(
  n_cells = 300,
  n_genes = 100,
  n_tfs = 50,
  n_peaks = 1000,
  n_celltypes = 3,
  sparsity = 0.9,
  atac_sparsity = 0.9
)

Arguments

n_cells

Number of cells to simulate

n_genes

Number of genes to simulate

n_tfs

Number of transcription factors

n_peaks

Number of ATAC peaks to simulate

n_celltypes

Number of cell types to simulate

sparsity

Sparsity level of the expression matrix (0-1)

atac_sparsity

Sparsity level of the ATAC matrix (0-1)

Value

A list containing simulated data