Plot sub-network centered around one TF.

plot_tf_network(object, ...)

# S4 method for class 'CSNObject'
plot_tf_network(
  object,
  tfs = NULL,
  network = DefaultNetwork(object),
  celltypes = NULL,
  graph = "module_graph",
  circular = TRUE,
  edge_width = 0.2,
  edge_color = c(`-1` = "darkgrey", `1` = "orange"),
  node_size = 3,
  text_size = 10,
  label_nodes = c("tfs", "all", "none"),
  color_edges = TRUE,
  ...
)

Arguments

object: The input data, a csn object.
...: Arguments for other methods
tfs: The transcription factor to center around.
network: Name of the network to use.
celltypes: Celltypes to plot. If NULL, all celltypes are plotted.
graph: Name of the graph.
circular: Logical. Layout tree in circular layout.
edge_width: Edge width.
edge_color: Edge color.
node_size: Node size.
text_size: Font size for labels.
label_nodes: String, indicating what to label. * 'tfs' - Label all TFs. * 'all' - Label all genes. * 'none' - Label nothing (except the root TF).
color_edges: Logical, whether to color edges by direction.

Value

A CSNObject object.