quick plot of top regulators given targets in dynamic networks based on reconstruction weight, colored by expression and interaction type

plot_targets_with_top_regulators_detail(
  network,
  targets,
  epochs_list,
  weight_column = "weight",
  gene_ranks = NULL,
  regulators_num = 5,
  network_order = NULL,
  fixed_layout = TRUE,
  layout_alg = "fr",
  declutter = TRUE
)

Arguments

network: the result of running epochGRN
targets: targets
epochs_list: result of running assign_epochs
weight_column: column name containing reconstruction weights to use
gene_ranks: gene_ranks
regulators_num: number of top regulators to plot
network_order: which epochs or transitions to plot
fixed_layout: whether or not to fix node positions across epoch networks
layout_alg: layout algorithm if fixed_layout. Defaults to FR. Ignored if fixed_layout==FALSE.
declutter: if TRUE, will only label nodes with active interactions in given network

Value

plot