Useful plotting function to plot heatmap with pre-split matrix — plot_heatmap_by_treatment • inferCSN

Useful plotting function to plot heatmap with pre-split matrix

plot_heatmap_by_treatment(
  expList,
  meta_data,
  pseudotime_column = "latent_time",
  toScale = T,
  limits = c(0, 5),
  smooth = TRUE,
  anno_colors = NA,
  fontSize = 8
)

Arguments

expList: list of expression matrices
meta_data: sample table
pseudotime_column: column in sample table containing pseudotime annotation
toScale: whether or not to scale expression
limits: limits on expression
smooth: whether or not to smooth expression across pseudotime for cleaner plotting
anno_colors: annotation colors
fontSize: heatmap font size

Value

pheatmap