Plot gene ranks and network properties

Plot gene ranks and network properties

plot_gene_rank(object, ...)

# S4 method for class 'Network'
plot_gene_rank(
  object,
  method = c("page_rank", "degree_distribution"),
  weight_cutoff = 0.1,
  compare_random = TRUE,
  ...
)

# S4 method for class 'data.frame'
plot_gene_rank(
  object,
  method = c("page_rank", "degree_distribution"),
  weight_cutoff = 0.1,
  compare_random = TRUE
)

Arguments

object

Network object

...

Other params

method

Character, ranking method: "page_rank" or "degree_distribution"

weight_cutoff

Numeric, threshold for edge weight filtering

compare_random

Logical, whether to compare with randomized network

Value

Combined ggplot object