Get sub-network centered around one TF.

get_tf_network(object, ...)

# S4 method for class 'CSNObject'
get_tf_network(
  object,
  celltypes = NULL,
  tfs = NULL,
  features = NULL,
  network = DefaultNetwork(object),
  graph = "module_graph",
  order = 3,
  keep_all_edges = FALSE,
  verbose = TRUE,
  cores = 1,
  ...
)

Arguments

object: The input data, a csn object.
...: Arguments for other methods
celltypes: Celltypes to plot. If NULL, all celltypes are plotted.
tfs: The transcription factors to center around.
features: Features to use. If NULL uses all features in the graph.
network: Name of the network to use.
graph: Name of the graph.
order: Integer indicating the maximal order of the graph.
keep_all_edges: Logical, whether to maintain all edges to each leaf or prune to the strongest overall connection.
verbose: Logical. Whether to print messages.
cores: Logical. Whether to parallelize the computation with foreach.

Value

A CSNObject object.