Get dimensional information — get_embedding • inferCSN

Get dimensional information

get_embedding(object, ...)

# S4 method for class 'matrix'
get_embedding(object, cores = 1, seed = 1, dims = 10, ...)

# S4 method for class 'Seurat'
get_embedding(object, reduction = "umap", dims = 2, ...)

Arguments

object: The input data, a matrix with cells/samples by genes/features or a seurat object.
...: Arguments for other methods
cores: Using n threads for umap.
seed: Set a random seed, default sets to 1.
dims: The number of dimensions to use.
reduction: The reduction to use.

Value

Embedding

Examples

if (FALSE) { # \dontrun{
data("example_matrix")
dimensional_information <- get_embedding(example_matrix)
} # }