Finds binding targets given list of dataframes containing binding info for effectors

Finds binding targets given list of dataframes containing binding info for effectors

find_targets(
  aList,
  column = "max_score",
  by_rank = FALSE,
  n_targets = 2000,
  threshold = NULL
)

Arguments

aList

the result of running score_targets

column

column name used in either ranking or thresholding the possible targets

by_rank

if TRUE will return top n_targets; if FALSE will use thresholds

n_targets

the number of targets to return for each effector if by_rank=TRUE

threshold

threshold to use if by_rank=FALSE

Value

list of binding targets for list of effectors