Scan for motifs in candidate regions — find_motifs • inferCSN

Scan for motifs in candidate regions

find_motifs(object, ...)

# S4 method for class 'CSNObject'
find_motifs(object, pfm, genome, motif_tfs = NULL, verbose = TRUE, ...)

Arguments

object: The input data, a csn object.
...: Arguments for other methods
pfm: A PFMatrixList object with position weight matrices.
genome: A BSgenome object with the genome of interest.
motif_tfs: A data frame matching motifs with TFs. The first column is assumed to be the name of the motif, the second the name of the TF.
verbose: Display messages.

Value

A CSNObject object with updated motif info.