find_cuts_by_similarity

Source: R/dynamic_network.R

Returns cuts to define epochs via sliding window comparison

find_cuts_by_similarity(
  matrix,
  dynamic_object,
  winSize = 2,
  limit_to = NULL,
  p_value = 0.05
)

Arguments

matrix

genes-by-cells expression matrix

dynamic_object

result of running findDynGenes or define_epochs

winSize

number of cells to each side to compare each cell to

limit_to

vector of genes on which to base epoch cuts, for example, limiting to TFs

p_value

pval threshold if gene is dynamically expressed

Value

vector of pseudotimes at which to cut data into epochs