Returns cuts to define epochs — find_cuts_by

Returns cuts to define epochs via clustering

find_cuts_by_clustering(
  matrix,
  dynamic_object,
  num_epochs,
  limit_to = NULL,
  method = "kmeans",
  p_value = 0.05
)

Arguments

matrix: genes-by-cells expression matrix
dynamic_object: result of running findDynGenes or define_epochs
num_epochs: the number of epochs
limit_to: vector of genes on which to base epoch cuts, for example, limiting to TFs
method: what clustering method to use, either 'kmeans' or 'hierarchical'
p_value: pval threshold if gene is dynamically expressed

vector of pseudotimes at which to cut data into epochs