find genes expressed dynamically

find genes expressed dynamically

findDynGenes(
  object,
  meta_data,
  celltype_by = NULL,
  group_column = "cluster",
  pseudotime_column = "pseudotime",
  cores = 1
)

Arguments

object

properly normalized expression matrix

meta_data

sample table that includes pseudotime, rownames = cells, and a group column

celltype_by

vector of group names to include

group_column

column name in meta_data annotating groups in the celltype_by

pseudotime_column

column name in meta_data annotating pseudotime or latent time

cores

cores

Value

pvals and cell info