Embed perturbation results

Embed perturbation results

embedPerturbation(
  object,
  reduction_method = "umap",
  dims = 2,
  scale = TRUE,
  cores = 1,
  seed = 1
)

# S4 method for class 'Network'
embedPerturbation(
  object,
  reduction_method = "umap",
  dims = 2,
  scale = TRUE,
  cores = 1,
  seed = 1
)

Arguments

object

A Network or CSNObject object

reduction_method

Character, dimensionality reduction method ("umap", "tsne", "pca")

dims

Number of dimensions to compute

scale

Whether to scale the data before reduction

cores

Number of cores for parallel processing

seed

Random seed for reproducibility

Value

Updated object with embedded perturbation results