find genes expressed dynamically — dynamic_genes_new • inferCSN

find genes expressed dynamically

dynamic_genes_new(
  object,
  meta_data,
  celltype_by = NULL,
  group_column = "cluster",
  pseudotime_column = "pseudotime",
  min_cells = 100,
  p_value = 0.05,
  verbose = TRUE,
  cores = 1
)

Arguments

object: properly normalized expression matrix
meta_data: sample table that includes pseudotime, rownames = cells, and a group column
celltype_by: vector of group names to include
group_column: column name in meta_data annotating groups in the celltype_by
pseudotime_column: column name in meta_data annotating pseudotime or latent time
min_cells: min cells
p_value: p_value = 0.05
verbose: verbose
cores: cores

Value

pvals and cell info