Computes Jaccard similarity between top regulators in two sets of networks — compute_JI_topregs • inferCSN

Computes Jaccard similarity between top regulators in two sets of networks

compute_JI_topregs(
  netlist1,
  netlist2,
  n_regs = 15,
  method = "pagerank",
  compare_within_netlist1 = TRUE,
  compare_within_netlist2 = TRUE
)

Arguments

netlist1: list of grnDFs
netlist2: list of grnDFs
n_regs: the number of top regulators to compare from each network
method: method to find top regulators. Currently only supports "pagerank"
compare_within_netlist1: whether or not to do pairwise comparisons between networks in netlist1
compare_within_netlist2: whether or not to do pairwise comparisons between networks in netlist2

Value

dataframe of Jaccard similarities of top regulators