Assigns genes to epochs just based on which mean is maximal

Source: R/dynamic_network.R

Assigns genes to epochs just based on which mean is maximal

assign_epochs_simple(
  matrix,
  dynamic_object,
  num_epochs = 3,
  pThresh = 0.01,
  toScale = FALSE,
  key_word = "epoch"
)

Arguments

matrix

expression matrix

dynamic_object

result of running findDynGenes

num_epochs

num_epochs

pThresh

pThresh

toScale

toScale

key_word

key_word

Value

data.frame of dynamically expressed genes, cluster, peakTime, ordered by peaktime