The Network class

The Network object stores the inferred network itself, information about the fitting process as well as graph representations of the network.

Slots

data

A matrix.

modules

A list TF modules.

regulators

A named list containing the transcription factors included in the network.

targets

A named list containing the target genes included in the network.

metrics

A dataframe with goodness of fit measures.

coefficients

A dataframe with the fitted coefficients.

graphs

Graphical representations of the inferred network.

network

A dataframe containing the network edges and their properties.

params

A named list with GRN inference parameters.

perturbation

A Perturbation object containing perturbation analysis results.