inferCSN

Introduction

inferCSN is an R package for inferring Cell-Specific gene regulatory Network from single-cell RNA data.

inferCSN+ workflow diagram

Installation

You can install the released version from CRAN use:

install.packages("inferCSN")
# or
if (!require("pak", quietly = TRUE)) {
  install.packages("pak")
}
pak::pak("inferCSN")

You can install the development version from GitHub use pak:

if (!require("pak", quietly = TRUE)) {
  install.packages("pak")
}
pak::pak("mengxu98/inferCSN")

Usage

Examples

For a matrix object. 

library(inferCSN)
data("example_matrix")

network <- inferCSN(
  example_matrix
)

More functions and usages about inferCSN? Please reference here.

Citation

If you use inferCSN in your work, please cite it reference here.