Labs

Sunday, November 24, 2024

Here is a curated list of Labs conducting research in bioinformatics, single-cell RNA sequencing (scRNA-seq), and related fields. Each lab is listed with their notable contributions and tools.

Bioinformatics tools

Lab Masterpiece Description
Sun Lab TDEseq Developing statistical methods for genomics research
satijalab seurat Leading lab in single-cell analysis, creators of the Seurat package

Bioinformation

Lab Masterpiece Description
Feng Zhang VECTOR Developing computational methods for biological data analysis
Quan Zou Portfolio Research in bioinformatics and machine learning

Brain development

Lab Masterpiece Description
丰富环境对儿童大脑发育的影响 探讨环境丰富度对儿童大脑发育的影响。

Brain Imaging

Lab Masterpiece Description
Computational Brain Imaging Group CBIG Specializing in brain imaging analysis and computational methods

Cell fate transition

Lab Masterpiece Description
从基因调控逻辑解码细胞命运决定的基本原理 探讨基因调控网络在细胞命运决定中的作用。

Enrichment analysis

Lab Masterpiece Description
一文掌握GSEA 详细介绍基因集富集分析(GSEA)的原理和应用。

Gene regulatory network

Lab Masterpiece Description
LULAB Publications Systems biology approach to gene regulatory networks
THE NETWORK ZOO Collection of network biology methods and tools
The Glass Group lionessR Network analysis in biological systems
aertslab SCENIC Developers of SCENIC for gene regulatory network inference
netbiolab scHumanNet Research in human gene regulatory networks at single-cell resolution
zpliulab scGENA Developing tools for single-cell gene regulatory network analysis

GWAS

Lab Masterpiece Description
GWASLab Research in genome-wide association studies and genetic analysis

Network dynamics

Lab Masterpiece Description
ZhiyuanLi lab Research in network dynamics and systems biology

R · statistics

Lab Masterpiece Description
Yihui Xie Portfolio R programming and statistical computing expert

scRNA-seq and gene networks

Lab Masterpiece Description
QuaDBio Group Pando Quantitative developmental biology and single-cell genomics

scRNA-seq tools

Lab Masterpiece Description
theislab scvelo Pioneers in RNA velocity analysis and single-cell methods

Similarity Network Fusion

Lab Masterpiece Description
Similarity Network Fusion SNFtool Methods for integrating multiple data types through network fusion
Name PI Institution Research
Other
Computational Brain Imaging Group
Feng Zhang
GWASLab
LULAB
QuaDBio Group
Quan Zou
Similarity Network Fusion
Sun Lab
THE NETWORK ZOO
The Glass Group
Yihui Xie
ZhiyuanLi lab
aertslab
netbiolab
satijalab
theislab
zpliulab
一文掌握GSEA
丰富环境对儿童大脑发育的影响
从基因调控逻辑解码细胞命运决定的基本原理

Databases

Articles