Articles

Saturday, November 23, 2024

Here is a curated list of Articles covering various topics in bioinformatics, including single-cell RNA sequencing (scRNA-seq), genomics, and related fields. These resources are regularly updated and maintained.

Journal Date Title Code Data Citation
BioAge
Cell Reports 2022 Distinct biological ages of organs and systems identified from a multi-omics study R figshare citation
HAR
Nature Communications 2023 Genes associated with cognitive ability and HAR show overlapping expression patterns in human cortical neuron types MATLAB Website citation
Medicine
Nature Network Boston 2024 A brain cell atlas integrating single-cell transcriptomes across human brain regions Jupyter Notebook Website citation
Spatiotemporal transcriptomic
Developmental cell 2022 High-resolution 3D spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae R Python Website citation
Tumor
scientific data 2023 An integrated single-cell transcriptomic dataset for non-small cell lung cancer R figshare citation
Science 2018 Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics Jupyter Notebook citation
Nature Computational Science 2021 Modeling gene regulatory networks using neural network architectures Python GEO Zenodo citation
Science 2021 Pan-cancer single-cell landscape of tumor-infiltrating T cells R Python Shell PKU citation
Nature communications 2023 Single-cell analysis reveals prognostic fibroblast subpopulations linked to molecular and immunological subtypes of lung cancer R GEO Zenodo citation
Genome Medicine 2023 Tumor microenvironment remodeling after neoadjuvant immunotherapy in non-small cell lung cancer revealed by single-cell RNA sequencing R Python GEO citation

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